[LA-SiGMA] LSU HPC/LONI system updates
Wei P Feinstein
wfeinstein at lsu.edu
Tue Sep 8 11:20:42 CDT 2015
****************** HPC/LONI SYSTEM UPDATES (AUG, 2015<http://www.hpc.lsu.edu/sysnews/index.php>)<http://www.hpc.lsu.edu/sysnews/index.php>*************
CONTENTS:
LONI HPC
QB2
Eric
LSU HPC
SuperMIC
SuperMike2
*******************************************************************
I LONI QB2--Nvidia GPU
Software
Newly installed packages
Key: amber/14/INTEL-140-MVAPICH2-2.0
Description: "Amber" refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos.
Key: espresso/5.1.2/INTEL-140-OPENMPI-1.8.1
Description: Quantum Espresso is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials.
Key: paraview/4.3.1/INTEL-140-MVAPICH2-2.0
Description: Description: Paraview: An open-source, multi-platform data analysis and visualization application. -
Key: pgi/14.10
Description: Description: The Portland Group compilers for C, C++ and Fortran. It also supports OpenACC. http://www.pgroup.com/resources/docs.htm
Key: pgi/15.4
Description: Description: The Portland Group compilers for C, C++ and Fortran. It also supports OpenACC. http://www.pgroup.com/resources/docs.htm
Key: subversion/1.8.13/gcc-4.9.0
Description: Subversion is an open source version control system. It was created by CollabNet Inc. in 2000, and is now a top-level Apache project being built and used by a global community of contributors.
Key: vmd/1.9.2
Description: VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
Updated packages
Key: cuda/7.0
Description: Compute Unified Device Architecture (CUDA) is a parallel computing architecture developed by Nvidia for graphics processing
Retired packages
Key: gate/7.0/GCC-4.4.7
Description: Software for the analysis and visualization of high-dimensional time series express data
Maintenance Scheduled
Not scheduled
Known Problems
No impact on users
*******************************************************************
II LONI Eric
Software
Retired packages
Key: +uberftp-2.6
Description: Grid FTP Client
*******************************************************************
III LSU HPC SuperMIC--Intel Xeon Phi
Software
Newly installed packages
Key: amber/14/INTEL-140-MVAPICH2-2.0
Description: "Amber" refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos.
Key: boost/1.55.0/INTEL-14.0.2
Description: Description: Boost provides free peer-reviewed portable C++ source libraries. -
Key: boost/1.55.0/INTEL-14.0.2-mic
Description: Description: Boost provides free peer-reviewed portable C++ source libraries. Intel Xeon Phi version (mic) - URL: http://www.boost.org/
Key: espresso/5.1.2/INTEL-140-OPENMPI-1.8.4
Description: Quantum Espresso is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials.
Key: hpx/0.9.10/impi-4.1.3.048-intel64
Description: Description: HPX is a general purpose C++ runtime system for parallel and distributed applications of any scale. - Built with Intel MPI for CPU only
Key: hpx/0.9.10/impi-4.1.3.048-intel64-mic
Description: Description: HPX is a general purpose C++ runtime system for parallel and distributed applications of any scale. - Intel Xeon Phi (mic) version built with impi
Key: hpx/0.9.10/mvapich2-2.0-INTEL-14.0.2
Description: Description: HPX is a general purpose C++ runtime system for parallel and distributed applications of any scale. - Build with MVAPICH2
Key: paraview/4.3.1/GCC-4.9.0
Description: Description: Paraview: An open-source, multi-platform data analysis and visualization application. -
Key: paraview/4.3.1/INTEL-140-MVAPICH2-2.0
Description: Description: Paraview: An open-source, multi-platform data analysis and visualization application. -
Key: siesta/3.2/INTEL-140-OPENMPI-1.8.4
Description: SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids.
Updated packages
Key: blast/2.2.31/INTEL-14.0.2
Description: Description: Basic Local Alignment Search Tool, or BLAST, is an algorithm
Key: pgi/14.10
Description: Description: The Portland Group compilers for C, C++ and Fortran. It also supports OpenACC. http://www.pgroup.com/resources/docs.htm
Key: pgi/15.4
Description: Description: The Portland Group compilers for C, C++ and Fortran. It also supports OpenACC. http://www.pgroup.com/resources/docs.htm
Key: globus/6.0
Description: globus client xsede 6.0-1
Maintenance Scheduled
Not scheduled
Known Problems
No impact on users
*******************************************************************
IV LSU HPC SuperMike2
Software
Newly installed packages
Key: +geant4-4.10.00.p02-gcc-4.4.6
Description: Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.
Key: +gsl-1.9-gcc-4.7.2
Description: GNU scientific library
Key: +mrbayes-3.2.5-Intel-13.0.0-openmpi-1.6.2
Description: MrBayes is a free software program which performs Bayesian inference of phylogeny MrBayes is a free software program which performs Bayesian inference of phylogeny
Key: +mrbayes-3.2.5-Intel-13.0.0-openmpi-1.6.2-CUDA-4.2.9
Description: MrBayes is a free software program which performs Bayesian inference of phylogeny
Key: +mvapich2-2.1-pgi-15.4
Description: An MPI-2 implementation (conforming to MPI 2.2 standard) which includes all MPI-1 features.
Key: +openmpi-1.6.2-pgi-15.4
Description: open source Message Passing Interface<http://www.mpi-forum.org/> implementation that is developed and maintained by a consortium of academic, research, and industry partners.
Key: +portland-14.10
Description: Portland Group's high-performance compilers and tools.
Key: +portland-15.4
Description: Portland Group's high-performance compilers and tools.
Key: +R-3.2.0-gcc-4.7.2
Description: free software environment for statistical computing and graphics
Key: +subversion-1.8.13
Description: Subversion is an open source version control system
Retired packages
Key: +geant-4.10.00.p02-gcc-4.4.6
Description: Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.
Key: +matlab-r2014b
Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.
Key: +portland-11.5
Description: Portland Group's high-performance compilers and tools.
Key: +portland-13.7
Description: Portland Group's high-performance compilers and tools.
Maintenance Scheduled
Not scheduled
Known Problems
No impact on users
*******************************************************************
Wei Feinstein, Ph.D.
High Performance Computing
Louisiana State University
337 Frey Computing Services Center
Baton Rouge, LA 70803
Office 225-578-0582 | Mobile 251-599-3814
wfeinstein at lsu.edu<mailto:wfeinstein at lsu.edu> | lsu.edu<http://lsu.edu> | hpc.lsu.edu<http://hpc.lsu.edu>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: https://mail.loni.org/mailman/private/lasigma/attachments/20150908/95e19278/attachment-0001.html
More information about the LaSiGMA
mailing list